OSX UHD runtime troubles

luislavena · February 12, 2012, 12:14am

Hi,
I’m trying to build and run GNURadio on OSX Lion (with MacPorts) but I
am having trouble with UHD.

I’ve built and install GNURadio (from git) however when I run anything
the Python interpreter crashes like so…
In [1]: import gnuradio.uhd
Mac OS; GNU C++ version 4.2.1 (Based on Apple Inc. build 5658) (LLVM
build 2335.15.00); Boost_104800; UHD_003.004.000-122b947

Fatal Python error: Interpreter not initialized (version mismatch?)

Since I initially got UHD as a binary I uninstalled it then built it
from the sources but I get the same problem.

Running ‘ccmake’ shows the Python path as /opt/local/bin as I expect.

The stack trace and binary image list look like so…
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff8bd5982a __kill + 10
1 libsystem_c.dylib 0x00007fff892b6a9c abort + 177
2 org.python.python 0x00000001035b196e Py_FatalError +
49
3 org.python.python 0x00000001035af46b Py_InitModule4_64

74
4 _uhd_swig.so 0x0000000103472b8f init_uhd_swig +
543
5 org.python.python 0x0000000102fce1aa
_PyImport_LoadDynamicModule + 170
6 org.python.python 0x0000000102fcaae5 imp_load_module +
341
7 org.python.python 0x0000000102fb4a7b
PyEval_EvalFrameEx + 18011
8 org.python.python 0x0000000102fb7e13 fast_function +
179
9 org.python.python 0x0000000102fb4b2d
PyEval_EvalFrameEx + 18189
10 org.python.python 0x0000000102fb7cd7 PyEval_EvalCodeEx
2103
11 org.python.python 0x0000000102fb7d56 PyEval_EvalCode +
54
12 org.python.python 0x0000000102fcb123
PyImport_ExecCodeModuleEx + 243
13 org.python.python 0x0000000102fcb796
load_source_module + 1462
14 org.python.python 0x0000000102fcc763 import_submodule
467
15 org.python.python 0x0000000102fcc97b load_next + 251
16 org.python.python 0x0000000102fcd7d0
PyImport_ImportModuleLevel + 1184
17 org.python.python 0x0000000102faadf4
builtin___import__ + 132
18 org.python.python 0x0000000102f1cae1 PyObject_Call +
97
19 org.python.python 0x0000000102faf824
PyEval_CallObjectWithKeywords + 180
20 org.python.python 0x0000000102fb6746
PyEval_EvalFrameEx + 25382
21 org.python.python 0x0000000102fb7cd7 PyEval_EvalCodeEx
2103
22 org.python.python 0x0000000102fb7e88 fast_function +
296
23 org.python.python 0x0000000102fb4b2d
PyEval_EvalFrameEx + 18189
24 org.python.python 0x0000000102fb7cd7 PyEval_EvalCodeEx
2103
25 org.python.python 0x0000000102fb7d56 PyEval_EvalCode +
54
26 org.python.python 0x0000000102fcb123
PyImport_ExecCodeModuleEx + 243
27 org.python.python 0x0000000102fcb796
load_source_module + 1462
28 org.python.python 0x0000000102fcc155 load_package +
357
29 org.python.python 0x0000000102fcc763 import_submodule
467
30 org.python.python 0x0000000102fcc97b load_next + 251
31 org.python.python 0x0000000102fcd815
PyImport_ImportModuleLevel + 1253
32 org.python.python 0x0000000102faadf4
builtin___import__ + 132
33 org.python.python 0x0000000102f1cae1 PyObject_Call +
97
34 org.python.python 0x0000000102faf824
PyEval_CallObjectWithKeywords + 180
35 org.python.python 0x0000000102fb6746
PyEval_EvalFrameEx + 25382
36 org.python.python 0x0000000102fb7cd7 PyEval_EvalCodeEx
2103
37 org.python.python 0x0000000102fb7d56 PyEval_EvalCode +
54
38 org.python.python 0x0000000102fd7ca2
PyRun_InteractiveOneFlags + 578
39 org.python.python 0x0000000102fd7dfe
PyRun_InteractiveLoopFlags + 222
40 org.python.python 0x0000000102fd7ea7
PyRun_AnyFileExFlags + 119
41 org.python.python 0x0000000102fea919 Py_Main + 2969
42 org.python.python 0x0000000102f0af14 0x102f0a000 +
3860

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fff62b06430 rcx:
0x00007fff62b06418 rdx: 0x0000000000000000
rdi: 0x0000000000006cfe rsi: 0x0000000000000006 rbp:
0x00007fff62b06440 rsp: 0x00007fff62b06418
r8: 0x00000000000003f5 r9: 0x00007fff62b06438 r10:
0x00007fff8bd5ae62 r11: 0xffffff80002d8220
r12: 0x00000001034d2212 r13: 0x0000000000000000 r14:
0x0000000000000000 r15: 0x00000001034e9420
rip: 0x00007fff8bd5982a rfl: 0x0000000000000202 cr2:
0x00000001035ef464
Logical CPU: 0

Binary Images:
0x102f0a000 - 0x102f0aff7 +org.python.python (2.7.2 -
2.7.2)
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
0x102f13000 - 0x103054fef +org.python.python (2.7.2, [c]
2004-2011 Python Software Foundation. - 2.7.2)
<38D08105-FB64-390C-9187-7920DE495553>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/Python
0x103286000 - 0x1032c3fff +readline.so (??? - ???)
<4A8FB72E-7160-3FD8-B6C9-2CADAB9787EA>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/readline/readline.so
0x1032de000 - 0x10331dfef +libncurses.5.dylib (5.0.0 -
compatibility 5.0.0) <9FC5E997-7C15-3B1A-9953-8C1F2624ED31>
/opt/local/lib/libncurses.5.dylib
0x103400000 - 0x1034e3fff +_uhd_swig.so (??? - ???)
<2D31B6D9-420D-3FBB-9310-21A97E1442FA>
/usr/local/lib/python2.7/site-packages/gnuradio/uhd/_uhd_swig.so
0x103510000 - 0x10362bff7 org.python.python (2.7.1 -
2.7.1)
/System/Library/Frameworks/Python.framework/Versions/2.7/Python
0x103690000 - 0x1036acfff +libgnuradio-uhd.3.5.2git.dylib
(??? - ???)
/usr/local/lib/libgnuradio-uhd.3.5.2git.dylib
0x1036c0000 - 0x103965ff7 +libuhd.003.dylib (3.4.0 -
compatibility 3.0.0) <57F18B76-810C-3B34-AA8A-1FA0BBB6877C>
/usr/local/lib/libuhd.003.dylib
0x103a5e000 - 0x103beafef +libgnuradio-core.3.5.2git.dylib
(??? - ???) <54C1700A-CF6B-389F-86E5-025BF29D5D04>
/usr/local/lib/libgnuradio-core.3.5.2git.dylib
0x103c97000 - 0x103cd2ff7 +libgruel.3.5.2git.dylib (??? -
???) <61ACA8BD-1141-3D83-9401-BBE530AB1C99>
/usr/local/lib/libgruel.3.5.2git.dylib
0x103cf1000 - 0x103cf8ff7 +libboost_date_time-mt.dylib
(??? - ???)
/opt/local/lib/libboost_date_time-mt.dylib
0x103d0e000 - 0x103d45fff
+libboost_program_options-mt.dylib (??? - ???)
<4C667CDB-3DFD-3464-98CE-9FFAD309DF03>
/opt/local/lib/libboost_program_options-mt.dylib
0x103da2000 - 0x103db6ff7 +libboost_filesystem-mt.dylib
(??? - ???) <40946367-511F-3055-9935-C2A92A43FED8>
/opt/local/lib/libboost_filesystem-mt.dylib
0x103dd3000 - 0x103dd7fff +libboost_system-mt.dylib (??? -
???) <8D4D3BAD-265C-38C9-A5FA-3C8BC26E205D>
/opt/local/lib/libboost_system-mt.dylib
0x103ddc000 - 0x103dedff7 +libboost_thread-mt.dylib (??? -
???) <3556F4D9-FE25-30E3-B1DC-672A5FA8C295>
/opt/local/lib/libboost_thread-mt.dylib
0x103e0f000 - 0x103fc3fef +libgsl.0.dylib (17.0.0 -
compatibility 17.0.0) <864FD2D5-D4DA-3D83-A44F-9F54B0920D25>
/opt/local/lib/libgsl.0.dylib
0x104020000 - 0x104056fff +libgslcblas.0.dylib (??? - ???)
<2A099779-2959-317C-A2A5-2FD9B59F0B26>
/opt/local/lib/libgslcblas.0.dylib
0x10405a000 - 0x104200ff7 +libfftw3f.3.dylib (7.0.0 -
compatibility 7.0.0) <8A76D9D5-D593-3795-BC44-AB36522BF225>
/opt/local/lib/libfftw3f.3.dylib
0x104223000 - 0x104226fff +libfftw3f_threads.3.dylib
(7.0.0 - compatibility 7.0.0)
/opt/local/lib/libfftw3f_threads.3.dylib
0x10422a000 - 0x1042f3fe7 +libboost_regex-mt.dylib (??? -
???) <411E9326-49A0-309C-9669-8BBC31242190>
/opt/local/lib/libboost_regex-mt.dylib
0x1043b9000 - 0x104421fff
+libboost_unit_test_framework-mt.dylib (??? - ???)

/opt/local/lib/libboost_unit_test_framework-mt.dylib
0x104503000 - 0x104571fff +liborc-0.4.0.dylib (17.0.0 -
compatibility 17.0.0)
/opt/local/lib/liborc-0.4.0.dylib
0x10458a000 - 0x1046a8ff7 +libicuuc.48.dylib (48.1.0 -
compatibility 48.0.0) <5DF8A2F8-1C31-3BFF-A8A4-8A75C5E8B1E6>
/opt/local/lib/libicuuc.48.dylib
0x104703000 - 0x10488ffef +libicui18n.48.dylib (48.1.0 -
compatibility 48.0.0) <89D2AE9E-0CD3-3FC6-8DF3-D59F493854C8>
/opt/local/lib/libicui18n.48.dylib
0x10492d000 - 0x105a9afff +libicudata.48.dylib (48.1.0 -
compatibility 48.0.0) <0FF5FE6A-3A61-3A33-9836-C4A4EAE30DD5>
/opt/local/lib/libicudata.48.dylib
0x7fff62b0a000 - 0x7fff62b3ebaf dyld (195.6 - ???)
<0CD1B35B-A28F-32DA-B72E-452EAD609613> /usr/lib/dyld
0x7fff823c2000 - 0x7fff823dffff libxpc.dylib (77.18.0 -
compatibility 1.0.0) <26C05F31-E809-3B47-AF42-1460971E3AC3>
/usr/lib/system/libxpc.dylib
0x7fff82405000 - 0x7fff8240cfff libcopyfile.dylib (85.1.0 -
compatibility 1.0.0) <172B1985-F24A-34E9-8D8B-A2403C9A0399>
/usr/lib/system/libcopyfile.dylib
0x7fff82411000 - 0x7fff82416fff libcompiler_rt.dylib (6.0.0 -
compatibility 1.0.0) <98ECD5F6-E85C-32A5-98CD-8911230CB66A>
/usr/lib/system/libcompiler_rt.dylib
0x7fff8249d000 - 0x7fff8249ffff libquarantine.dylib (36.2.0 -
compatibility 1.0.0) <48656562-FF20-3B55-9F93-407ACA7341C0>
/usr/lib/system/libquarantine.dylib
0x7fff8266f000 - 0x7fff8267dfff libdispatch.dylib (187.7.0 -
compatibility 1.0.0) <712AAEAC-AD90-37F7-B71F-293FF8AE8723>
/usr/lib/system/libdispatch.dylib
0x7fff8342b000 - 0x7fff83431fff libmacho.dylib (800.0.0 -
compatibility 1.0.0)
/usr/lib/system/libmacho.dylib
0x7fff84cf2000 - 0x7fff84cf7fff libcache.dylib (47.0.0 -
compatibility 1.0.0)
/usr/lib/system/libcache.dylib
0x7fff85231000 - 0x7fff85239fff libsystem_dnssd.dylib (??? -
???) <7749128E-D0C5-3832-861C-BC9913F774FA>
/usr/lib/system/libsystem_dnssd.dylib
0x7fff87c29000 - 0x7fff87dfdfff com.apple.CoreFoundation (6.7.1

635.19) <57B77925-9065-38C9-A05B-02F4F9ED007C>
/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff87e5d000 - 0x7fff87e5efff libdnsinfo.dylib (395.6.0 -
compatibility 1.0.0) <718A135F-6349-354A-85D5-430B128EFD57>
/usr/lib/system/libdnsinfo.dylib
0x7fff87ff5000 - 0x7fff8806aff7 libc++.1.dylib (19.0.0 -
compatibility 1.0.0)
/usr/lib/libc++.1.dylib
0x7fff88134000 - 0x7fff8813aff7 libunwind.dylib (30.0.0 -
compatibility 1.0.0) <1E9C6C8C-CBE8-3F4B-A5B5-E03E3AB53231>
/usr/lib/system/libunwind.dylib
0x7fff8813b000 - 0x7fff8813ffff libdyld.dylib (195.5.0 -
compatibility 1.0.0)
/usr/lib/system/libdyld.dylib
0x7fff88888000 - 0x7fff88892ff7 liblaunch.dylib (392.18.0 -
compatibility 1.0.0) <39EF04F2-7F0C-3435-B785-BF283727FFBD>
/usr/lib/system/liblaunch.dylib
0x7fff89275000 - 0x7fff89352fef libsystem_c.dylib (763.12.0 -
compatibility 1.0.0)
/usr/lib/system/libsystem_c.dylib
0x7fff8941d000 - 0x7fff8941efff
libDiagnosticMessagesClient.dylib (??? - ???)
<3DCF577B-F126-302B-BCE2-4DB9A95B8598>
/usr/lib/libDiagnosticMessagesClient.dylib
0x7fff8941f000 - 0x7fff8941ffff libkeymgr.dylib (23.0.0 -
compatibility 1.0.0) <61EFED6A-A407-301E-B454-CD18314F0075>
/usr/lib/system/libkeymgr.dylib
0x7fff89437000 - 0x7fff894aafff libstdc++.6.dylib (52.0.0 -
compatibility 7.0.0) <6BDD43E4-A4B1-379E-9ED5-8C713653DFF2>
/usr/lib/libstdc++.6.dylib
0x7fff894d7000 - 0x7fff895bbe5f libobjc.A.dylib (228.0.0 -
compatibility 1.0.0) <871E688B-CF57-3BC7-80D6-F6476DFF109B>
/usr/lib/libobjc.A.dylib
0x7fff89c8e000 - 0x7fff89e90fff libicucore.A.dylib (46.1.0 -
compatibility 1.0.0) <38CD6ED3-C8E4-3CCD-89AC-9C3198803101>
/usr/lib/libicucore.A.dylib
0x7fff8a071000 - 0x7fff8a075fff libmathCommon.A.dylib (2026.0.0
compatibility 1.0.0)
/usr/lib/system/libmathCommon.A.dylib
0x7fff8a757000 - 0x7fff8a769ff7 libz.1.dylib (1.2.5 -
compatibility 1.0.0) <30CBEF15-4978-3DED-8629-7109880A19D4>
/usr/lib/libz.1.dylib
0x7fff8b8de000 - 0x7fff8b8e3ff7 libsystem_network.dylib (??? -
???) <5DE7024E-1D2D-34A2-80F4-08326331A75B>
/usr/lib/system/libsystem_network.dylib
0x7fff8b92c000 - 0x7fff8b959fe7 libSystem.B.dylib (159.1.0 -
compatibility 1.0.0) <095FDD3C-3961-3865-A59B-A5B0A4B8B923>
/usr/lib/libSystem.B.dylib
0x7fff8bd43000 - 0x7fff8bd63fff libsystem_kernel.dylib
(1699.22.73 - compatibility 1.0.0)
<69F2F501-72D8-3B3B-8357-F4418B3E1348>
/usr/lib/system/libsystem_kernel.dylib
0x7fff8c5c2000 - 0x7fff8c610fff libauto.dylib (??? - ???)
/usr/lib/libauto.dylib
0x7fff8c611000 - 0x7fff8c612ff7 libsystem_blocks.dylib (53.0.0
compatibility 1.0.0) <8BCA214A-8992-34B2-A8B9-B74DEACA1869>
/usr/lib/system/libsystem_blocks.dylib
0x7fff8c613000 - 0x7fff8c61eff7 libc++abi.dylib (14.0.0 -
compatibility 1.0.0) <8FF3D766-D678-36F6-84AC-423C878E6D14>
/usr/lib/libc++abi.dylib
0x7fff8c642000 - 0x7fff8c684ff7 libcommonCrypto.dylib
(55010.0.0 - compatibility 1.0.0)
/usr/lib/system/libcommonCrypto.dylib
0x7fff8cc57000 - 0x7fff8cc92fff libsystem_info.dylib (??? -
???) <35F90252-2AE1-32C5-8D34-782C614D9639>
/usr/lib/system/libsystem_info.dylib
0x7fff8daf3000 - 0x7fff8daf4ff7 libremovefile.dylib (21.1.0 -
compatibility 1.0.0) <739E6C83-AA52-3C6C-A680-B37FE2888A04>
/usr/lib/system/libremovefile.dylib
0x7fff8e5e5000 - 0x7fff8e5e6fff libunc.dylib (24.0.0 -
compatibility 1.0.0)
/usr/lib/system/libunc.dylib
0x7fff8ed40000 - 0x7fff8ed41ff7 libsystem_sandbox.dylib (??? -
???) <5087ADAD-D34D-3844-9D04-AFF93CED3D92>
/usr/lib/system/libsystem_sandbox.dylib
0x7fff8f068000 - 0x7fff8f071ff7 libsystem_notify.dylib (80.1.0
compatibility 1.0.0)
/usr/lib/system/libsystem_notify.dylib

Any help appreciated, thanks

–
Daniel O’Connor software and network engineer
for Genesis Software - http://www.gsoft.com.au
“The nice thing about standards is that there
are so many of them to choose from.”
– Andrew Tanenbaum
GPG Fingerprint - 5596 B766 97C0 0E94 4347 295E E593 DC20 7B3F CE8C

Daniel_OSConnor · February 12, 2012, 1:19am

I had similar symptoms with my OSX Lion machine and macports-built
dependencies. In my case, I was using the macports Python 2.6, but
pmt_swig.so was linked against the OSX-provided Python 2.7 library,
unlike everything else which was properly linked against the /opt/local
macports python 2.6.

The cmake command line that got it working for me was:
cmake …
-DPYTHON_LIBRARY=/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/config/libpython2.6.dylib
-DPYTHON_INCLUDE_DIR=/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6

In that case I’m not specifying the python executable because the proper
one was first in the path. I don’t know if this is exactly your problem,
but it’s definitely worth thinking through the library deps to make sure
you are not mixing python installations up.

In your case I am suspicious of the
“/System/Library/Frameworks/Python.framework/Versions/2.7/Python”
dependency when everything else is pointing to /opt/local.

-Peter

Daniel_OSConnor · February 12, 2012, 3:31am

On 12/02/2012, at 10:48, Peter Jensen wrote:

I had similar symptoms with my OSX Lion machine and macports-built dependencies.
In my case, I was using the macports Python 2.6, but pmt_swig.so was linked
against the OSX-provided Python 2.7 library, unlike everything else which was
properly linked against the /opt/local macports python 2.6.

The cmake command line that got it working for me was:
cmake …
-DPYTHON_LIBRARY=/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/config/libpython2.6.dylib
-DPYTHON_INCLUDE_DIR=/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6

In that case I’m not specifying the python executable because the proper one was
first in the path. I don’t know if this is exactly your problem, but it’s
definitely worth thinking through the library deps to make sure you are not mixing
python installations up.

In your case I am suspicious of the
“/System/Library/Frameworks/Python.framework/Versions/2.7/Python” dependency when
everything else is pointing to /opt/local.

Ah that’s a good point… I had assumed that MacPorts installed that,
however I see that it installs elsewhere.

I re-cmake’d with…
cmake …
-DPYTHON_LIBRARY=/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/config/libpython2.7.dylib
-DPYTHON_INCLUDE_DIR=/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7

and now it works, thanks!

I can’t actually test it with hardware yet but it’s progress

Fatal Python error: Interpreter not initialized (version mismatch?)
3 org.python.python 0x00000001035af46b Py_InitModule4_64 + 74
14 org.python.python 0x0000000102fcc763 import_submodule + 467
25 org.python.python 0x0000000102fb7d56 PyEval_EvalCode + 54
36 org.python.python 0x0000000102fb7cd7 PyEval_EvalCodeEx + 2103
r8: 0x00000000000003f5 r9: 0x00007fff62b06438 r10: 0x00007fff8bd5ae62
r11: 0xffffff80002d8220
0x103510000 - 0x10362bff7 org.python.python (2.7.1 - 2.7.1)

/System/Library/Frameworks/Python.framework/Versions/2.7/Python
0x104020000 - 0x104056fff +libgslcblas.0.dylib (??? - ???)
<2A099779-2959-317C-A2A5-2FD9B59F0B26> /opt/local/lib/libgslcblas.0.dylib
0x7fff82405000 - 0x7fff8240cfff libcopyfile.dylib (85.1.0 -
compatibility 1.0.0) <172B1985-F24A-34E9-8D8B-A2403C9A0399>
/usr/lib/system/libcopyfile.dylib
0x7fff8813b000 - 0x7fff8813ffff libdyld.dylib (195.5.0 - compatibility
1.0.0) /usr/lib/system/libdyld.dylib
0x7fff8b92c000 - 0x7fff8b959fe7 libSystem.B.dylib (159.1.0 -
compatibility 1.0.0) <095FDD3C-3961-3865-A59B-A5B0A4B8B923>
/usr/lib/libSystem.B.dylib

GPG Fingerprint - 5596 B766 97C0 0E94 4347 295E E593 DC20 7B3F CE8C
[email protected]
Discuss-gnuradio Info Page

–
Daniel O’Connor software and network engineer
for Genesis Software - http://www.gsoft.com.au
“The nice thing about standards is that there
are so many of them to choose from.”
– Andrew Tanenbaum
GPG Fingerprint - 5596 B766 97C0 0E94 4347 295E E593 DC20 7B3F CE8C